| Rank | Player | Club | Goals |
|---|---|---|---|
| 1 | Himanshu Jangra | Delhi FC | 12 |
| 2 | Phijam Sanathoi Meetei | Bhawanipore FC | 6 |
| 3 | Akshunna Tyagi | FC Bengaluru United | 4 |
| 4 | Devadath S | Kalighat Milan Sangha FC | 4 |
| 5 | Akash Tirkey | Delhi FC | 3 |
| 6 | Rahul Kumar Paswan | Karbi Anglong MS FC | 3 |
| 7 | Kevisanyu Peseyie | Karbi Anglong MS FC | 3 |
| 8 | Aravindraj Rajan | MYJ-GMSC | 2 |
| 9 | Asif O M | SC Bengaluru | 2 |
| 10 | Alister Anthony | Sporting Clube De Goa | 2 |
| 11 | Alocious M | NEROCA FC | 2 |
| 12 | Wungshung Lungleng | Delhi FC | 2 |
| 13 | Singte George Kom | Chanmari FC | 2 |
| 14 | Lalsiem Chongloi | Diamond Harbour FC | 2 |
| 15 | Lijo K | FC Bengaluru United | 2 |
| 16 | Sumay Shome | Calcutta Customs | 2 |
| 17 | Joyson R Gauncar | Sporting Clube De Goa | 2 |
| 18 | Abhishekh S Powar | SC Bengaluru | 1 |
| 19 | Karthick Thirumalai | SC Bengaluru | 1 |
| 20 | Khupminlun | Karbi Anglong MS FC | 1 |
| 21 | Yumnam Surchandra | NEROCA FC | 1 |
| 22 | Kiran Pandhare | MYJ-GMSC | 1 |
| 23 | Lalramdinsanga Ralte | FC Bengaluru United | 1 |
| 24 | Chanambam Samananda Singh | SC Bengaluru | 1 |
| 25 | Keisham Sanathoi Meitei | Delhi FC | 1 |
| 26 | Kean Lewis | MYJ-GMSC | 1 |
| 27 | Shunjanthan Ragul | FC Bengaluru United | 1 |
| 28 | Kahnngam Horam | NEROCA FC | 1 |
| 29 | Phijam Vikash Singh | Karbi Anglong MS FC | 1 |
| 30 | Aenam Graffenberg Jurwa | FC Bengaluru United | 1 |
| 31 | Md Amil Naim | Police AC | 1 |
| 32 | Chunsaba Barium | FC Bengaluru United | 1 |
| 33 | Vignesh V | 1 Ladakh FC | 1 |
| 34 | Nikhil Raj Murugesh | FC Bengaluru United | 1 |
| 35 | Ngangbam Naocha Singh | Sporting Clube De Goa | 1 |
| 36 | Doyal Alves | Sporting Clube De Goa | 1 |
| 37 | Harmanpreet Singh | Inter Kashi | 1 |
| 38 | Joel Colaco | Sporting Clube De Goa | 1 |
| 39 | Neeraj Bhandari | Delhi FC | 1 |
| 40 | Muhammad Ejaz Ahmed | Delhi | 1 |
| 41 | Shravan Shetty | MYJ-GMSC | 1 |
| 42 | Ashish Lalge | MYJ-GMSC | 1 |
| 43 | Arif Shaikh | MYJ-GMSC | 1 |
| 44 | Wangden Tamang | Services FC | 1 |