| Rank | Player | Club | Goals |
|---|---|---|---|
| 1 | Sajeesh E | Forca Kochi FC | 5 |
| 2 | Vishak Mohanan | Golden Threads FC | 5 |
| 3 | Sreeraj K | KSEB FC | 4 |
| 4 | Sreenath M | Wayanad United FC | 4 |
| 5 | Jemsheed Ali | Gokulam Kerala FC | 4 |
| 6 | Babble Sivery | Kerala Police | 4 |
| 7 | Aswin K V | Inter Kerala FC | 4 |
| 8 | Nijo Gilbert | Forca Kochi FC | 3 |
| 9 | Aboobacker Dilshad | Real Malabar FC | 3 |
| 10 | Ajmal Kaja KS | Golden Threads FC | 3 |
| 11 | Manoj Manjunath | Kerala | 3 |
| 12 | Nandhu Krishna | Gokulam Kerala FC | 3 |
| 13 | Sahil Rashid Dar | PFC Kerala | 3 |
| 14 | Arun Kumar D | Calicut FC | 3 |
| 15 | Antony Poulose | Calicut FC | 3 |
| 16 | Arunlal M | Kodagu FC | 2 |
| 17 | Prabanj Prasad | KSEB FC | 2 |
| 18 | Abin Augustin | Kovalam FC | 2 |
| 19 | Ajay Alex | FC Real Bengaluru | 2 |
| 20 | Shamnad K P | Bengaluru FC | 2 |
| 21 | Bibin Ajayan | Golden Threads FC | 2 |
| 22 | Haodamlian Vaiphei | Kerala Blasters FC | 2 |
| 23 | Vikram A | SAI, Kollam | 2 |
| 24 | Vivek K S | Inter Kerala FC | 2 |
| 25 | Mohammed Safneed | Real Malabar FC | 2 |
| 26 | Aflahudheen | EMEA College FC | 2 |
| 27 | Laishram Johnson Singh | Gokulam Kerala FC | 2 |
| 28 | Hrithik Antony | Kovalam FC | 2 |
| 29 | Thahir Zaman | EMEA College FC | 2 |
| 30 | Rahul Venu P | Calicut FC | 1 |
| 31 | Sujil NS | Kerala Police | 1 |
| 32 | Shabas Ahammed | Kerala Police | 1 |
| 33 | Shamil Shamnas | Golden Threads FC | 1 |
| 34 | Mohammed Nihal | FC Kerala | 1 |
| 35 | Vishnu CV | Golden Threads FC | 1 |
| 36 | Ajay PV | Gokulam Kerala FC | 1 |
| 37 | Karun Baby | KSEB FC | 1 |
| 38 | Shagil TS | Kovalam FC | 1 |
| 39 | Abdullah KS | Golden Threads FC | 1 |
| 40 | Dipin A | Golden Threads FC | 1 |
| 41 | Mahesh K | Real Malabar FC | 1 |
| 42 | Muhammed Safnad | Real Malabar FC | 1 |
| 43 | Muhammed Ashar | Inter Kerala FC | 1 |
| 44 | Atheendran K | Kerala Blasters FC | 1 |
| 45 | Aman Gaikwad | Gokulam Kerala FC | 1 |
| 46 | Muhammed Nihal | Wayanad United FC | 1 |
| 47 | Sujin S | Kerala Blasters FC | 1 |
| 48 | Shinu R | KSEB FC | 1 |
| 49 | Firos K | Kerala Police | 1 |
| 50 | Junain Kadvalath | Calicut FC | 1 |
| 51 | Prasanth Karuthadathkuni | Calicut FC | 1 |
| 52 | Muhammed Sinan | Gokulam Kerala FC | 1 |
| 53 | Yhoto Lohe | Calicut FC | 1 |
| 54 | Muhammad Adhnan K | Kerala Blasters FC | 1 |
| 55 | Laltinlen Haokip | Kerala Blasters FC | 1 |
| 56 | Muhammad Adhil | Kerala United FC | 1 |
| 57 | A V Arjundas | PFC Kerala | 1 |
| 58 | Viknesh M | Kerala | 1 |
| 59 | Arjun Jayaraj | Calicut FC | 1 |
| 60 | Adhil Muneer | Kerala United FC | 1 |
| 61 | Brijesh T Balan | Kerala Police | 1 |
| 62 | Sreerag V G | Kerala Police | 1 |
| 63 | Jamshid | Kerala Police | 1 |
| 64 | Akhil Praveenkumar | Inter Kerala FC | 1 |
| 65 | Muhammed Shuhaib C | EMEA College FC | 1 |
| 66 | Abdul Samad P | EMEA College FC | 1 |
| 67 | Fajil S | Kovalam FC | 1 |
| 68 | Akshay P M | Kovalam FC | 1 |
| 69 | Libin Yohannan | Inter Kerala FC | 1 |
| 70 | Ranjith V M | Kerala United FC | 1 |
| 71 | Anaj M | SAI, Kollam | 1 |
| 72 | Emil Benny | Gokulam Kerala FC | 1 |
| 73 | Muhammed Roshal | Calicut FC | 1 |
| 74 | Ajith K R | Calicut FC | 1 |
| 75 | Manoj M | Kovalam FC | 1 |
| 76 | Muhammed Sajad A | EMEA College FC | 1 |
| 77 | Renshad Mon | EMEA College FC | 1 |
| 78 | Mohamed Bilal | Gokulam Kerala FC | 1 |
| 79 | Arjun Raj | Real Malabar FC | 1 |
| 80 | Naveen Das | Gokulam Kerala FC | 1 |
| 81 | Naseeb Rahman | Gokulam Kerala FC | 1 |
| 82 | Muhammed Sahad | EMEA College FC | 1 |
| 83 | Muhammed Shajahan | EMEA College FC | 1 |
| 84 | Basith P P | EMEA College FC | 1 |
| 85 | Manoj | Calicut FC | 1 |
| 86 | Muhammed Aslam T K | Kerala United FC | 1 |
| 87 | Fuad Aiman | Wayanad United FC | 1 |
| 88 | Bikash Roy | SAI, Kollam | 1 |
| 89 | Joyal S | SAI, Kollam | 1 |
| 90 | Abin Rajan | Wayanad United FC | 1 |
| 91 | Wangden Lama | SAI, Kollam | 1 |
| 92 | Alvin David | Golden Threads FC | 1 |
| 93 | Muhammed Jiyad | Kerala Blasters FC | 1 |
| 94 | Muhammed Minshan | EMEA College FC | 1 |
| 95 | Akhil J Chandran | Inter Kerala FC | 1 |